Kazuharu Arakawa
gaou****@sfc*****
2008年 2月 28日 (木) 00:01:43 JST
g.
v.1.8.2リリースしました。
今回はウェブサービス用APIであるBioMOBYの実装がメイン
です。
help -w
で他のドキュメントと同じように、ウェブサービスを検索できます。
例えばKEGG関連のウェブサービスなら、
G > help -w kegg
Found keyword "kegg" in the following web services (13 hits).
RINGStest : Testing the query
for a KEGG Glycan ID given a KCF...
convertIdentifier2KeggID : This service
consumes an identifier from the follo...
convertKeggGeneId2PDBId : This service
consumes an identifier under the KEGG...
convertKeggGeneId2ProtId : This service
consumes an identifier under the KEGG...
getColoredKeggPathwayOfKeggIds : This service
takes as input a KEGG pathway and KEG...
getKeggCompoundsOnKeggPathway : This service,
given a KEGG pathway, searches for a...
getKeggIdsByKeggPathway : This service,
given a KEGG pathway, searches for a...
getKeggPathwayAsGif : This service,
given a KEGG pathway, returns a Gif ...
getKeggPathwaysByKeggID : This service,
given a KEGG identifier, attempts to...
getPubChemSubstanceIdByKeggCompound : This service,
given a KEGG compound, returns the a...
getUniprotDescriptorsByKeyword : Gets the uniprot
identifier and description from a...
getUniprotIdentifierByGeneName : This service
takes in a gene name, as an identifie...
getUniprotIdentifiersByKeyword : Gets uniprot
identifiers by keyword using the bfin...
詳細を見るには、-wに続けてサービス名を入れます。
G > help -w getKeggPathwayAsGif
Name: getKeggPathwayAsGif
Description:
This service, given a KEGG pathway, returns a Gif image of the
pathway if it exists.
For example, the <Object, KEGG_PATHWAY, 'hsa00053')
returns a diagram of the pathway 'ASCORBATE AND ALDRATE METABOLISM'.
Input:
pathway
Object: Object
Namespace: KEGG_PATHWAY
Output:
image
Object: b64_encoded_gif
Namespace:
Authority : bioinfo.icapture.ubc.ca
Contact : ekawa****@mrl*****
Type : Conversion
Category : moby
URL : http://bioinfo.icapture.ubc.ca:8090/mobyservices/
services/getKeggPathwayAsGif
LSID :
urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getKeggPath
wayAsGif:2007-12-03T19-38-05Z
実行するには、ws()を使います。
ws("getKeggPathwayAsGif", 'hsa00053'=>'KEGG_PATHWAY');
BioMOBYのサービスには使えないものも多いですが、これでG-language
GAEで
数百のウェブサービスを使えることになります。
changelogは以下の通り。
===== v.1.8.2 2008.02.27 =====
*now requires MOBY::Client::Central
*added help -w for searching web services through BioMOBY.
*added G::Tools::WebServices::ws for running BioMOBY web services.
*this is mainly the result of [[http://hackathon.dbcls.jp/|
BioHackathon 2008]]