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ftp.proxy is an application level gateway for FTP. It allows either forwarding to a specific host or optional client side server selection w/o allowed host list, access and command control trough external programs.

DrFTPD is an FTP server written in Java. It does
not handle transfers in the same way that normal
FTP servers do. Instead, it merges multiple FTP
sites into one, creating a distributed FTP
site/FTP cluster containing one master and many
slaves/nodes. When a client wants to transfer a
file from DrFTPD, DrFTPD finds the slave which has
the file, and tells the appropriate slave to
transfer the file instead of handling it itself.
This allows huge gains in total bandwidth and disk
capacity.

fk is an application proxy suite designed for building IP gateways. Ultimately, the intent is to provide a free software replacement for the TIS firewall toolkit.

TFTP Server is a multi-threaded TFTP server,
allowing any number of clients to connect
simultaneously. It supports tsize, blksize, and
interval options, PXE boot, and can be run
standalone or as a daemon. Port ranges can be
specified to work across firewalls. There is also
a single port version, for situations where
additional ports cannot be opened.

Jetty is an Open Source HTTP Servlet Server written in Java. It is a full featured HTTP/1.1 server and a Servlet container. It is designed to be small, fast, embeddable and extensible. It supports HTTP/1.1, servlets 2.3, and JSP 1.2.

Pavuk is a Web grabber with an optional GTK GUI, and optional support for downloading with multiple threads. It supports the HTTP, HTTPS, FTP, FTP via SSL, and Gopher protocols, as well as HTTP GET, and POST requests. It is capable of filling HTML forms while downloading HTML trees, and lets you mirror Web documents for local browsing. You can even synchronize changes to these documents. Recent versions also support processing of Javascript patterns in HTML pages. Pavuk have JavaScript bindings that allow writing of own scripts to perform special tasks.

Net::FTPServer is a full-featured, secure, extensible, and highly configurable FTP server which can serve files from a standard file system or a relational database. It is written in Perl, which provides natural protection against buffer overflows. It has feature parity with popular C-based servers such as wu-ftpd. The server offers virtual hosts (IP-based and experimental IP-less). It is configurable in Perl, for both small Perl "hacks" in the configuration file all the way up to complete server "personalities". It supports the latest RFCs and Internet Drafts. Authentication may be done through /etc/passwd, PAM or an authentication plug-in. Resource limits are supported. The server may run standalone or from inetd. chroot() jails are supported along with sophisticated programmable access control rules. All aspects of server use and configuration are comprehensively documented in a manual running to some 50 pages.

BIE (Business Integration Engine) is an open source integration system that makes it easy for organizations to exchange data with external trading partners regardless of their native applications. It competes in the same space as applications like Microsoft BizTalk except that it is truly cross-platform since it written in Java.

JFTP is a graphical FTP client that allows you to transfer files securely over the Internet using FTP and SFTP. It includes support for all basic and advanced FTP tasks, support for SSL with 128-bit encryption, multiple concurrent FTP sessions, a secured favorites manager, and a certificate manager. Internationalization and localization is fully supported, and multiple deployment options are available, including standard installation, a Java Applet, and Java Web Start.

ftpcopy is a small mirror-like utility to copy files or directory trees with FTP. ftpcopy understands EPLF and traditional listing formats.

Java Forward Error Correction (FEC) Library is the fastest and most mature Java FEC library available (FEC is an essential building block of any satellite or IP multicast based content distribution system). It features: Fast multi-threaded I/O routines for encoding and decoding files; Native Linux, Solaris, and Win32 accellerators with pure Java fallback; and an FEC codec plugin interface. Cryptograhic hashes can be used for checking file integrity.

Java FSP Library adds support for the FSP protocol to any Java program by implementing the URLStreamHandler factory.

Event Horizon (EVH) is a Web-based application
which facilitates the secure transfer of files.
Originally designed to replace FTP transfers, EVH
currently allows uploads via HTTP and can also
handle files uploaded via FTP. All file uploads
are assigned an expiration period, after which the
file is permanently removed from the system. This
allows for automatic cleanup as well, keeping the
underlying filesystem in tip-top shape.

Nephthys provides a Web interface to create
file-sharing "buckets", through which data can be
shared. Nephthys handles the buckets in the local
filesystem of the server. Access and data transfer
is made via FTP and WebDAV. Nephthys itself does
not provide the access protocol, but relies on
well known projects like Apache HTTPD (WebDAV) and
ProFTPD (FTP).

FSP Proxy is a proxy server for FSP to HTTP/1.0
protocol translation. It also accepts gopher://
URLs as an alias for fsp://. You can set it up as
a gopher proxy in your browser, and easily access
FSP sites.