Simple Project List 軟體列表

393 projects in result set
最後更新: 2014-05-21 18:22


MCL-edge is an integrated command-line driven workbench for large scale network analysis. It includes programs for the computation of shortest paths, diameter, clustering coefficient, betweenness centrality, and network shuffles. A module for loading and analyzing gene expression data as a network is provided. The MCL algorithm is a fast and highly scalable cluster algorithm for networks based on stochastic flow. The flow process employed by the algorithm is mathematically sound and intrinsically tied to cluster structure, which is revealed as the imprint left by the process. The threaded implementation has handled networks with millions of nodes within hours and is widely used in the fields of bioinformatics, graph clustering, and network analysis.

(Machine Translation)
最後更新: 2019-04-19 04:08

Systems Biology Markup Language (SBML)

システム生物学のマークアップ言語 (SBML) はシステム生物学における計算モデルを表現するための XML ベースの記述言語です。詳細についてはプロジェクトの web サイトを参照してください。

(Machine Translation)
最後更新: 2014-02-17 20:04


SHOGUN is a machine learning toolbox whose focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It provides a generic SVM object interfacing to several different SVM implementations, all making use of the same underlying, efficient kernel implementations. Apart from SVMs and regression, SHOGUN also features a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons, and algorithms to train hidden Markov models. SHOGUN can be used from within C++, Matlab, R, Octave, and Python.

最後更新: 2008-09-12 04:33


Redet is a tool for developing and executing regular expressions using any of more than 50 search programs, editors, and programming languages, intended both for developing regular expressions for use elsewhere and as a search tool in its own right. For each program in each locale, a palette showing the available constructs is provided. The properties of each program are determined by runtime tests, which guarantees that they will be correct for the program version and locale. Additional features include persistent history, extensive help, a variety of character entry tools, and the ability to change locale while running. Redet is highly configurable and fully supports Unicode.

最後更新: 2005-04-29 13:55


The libmba package is a collection of mostly independent C modules potentially useful to any project. There are the usual ADTs including a linkedlist, hashmap, pool, stack, and varray, a flexible memory allocator, CSV parser, path canonicalization routine, I18N text abstraction, configuration file module, portable semaphores, condition variables, and more. The code is designed so that individual modules can be integrated into existing codebases rather than requiring the user to commit to the entire library. The code has no typedefs, few comments, and extensive man pages and HTML documentation.

最後更新: 2010-12-07 21:51


The Biochemical ALgorithms Library (BALL) is a
framework for rapid application development in
molecular modeling and structural bioinformatics.
BALL provides an extensive set of data structures
as well as classes for molecular mechanics,
advanced solvation methods, comparison and
analysis of protein structures, file
import/export, NMR shift prediction, and
visualization. Its extensibility results from an
object-oriented and generic programming approach.

(Machine Translation)
最後更新: 2014-04-02 15:30


openModeller is a C++ framework providing tools and an API for ecological niche modeling using a variety of algorithms. It can be used to predict species potential distribution based on a set of georeferenced occurrence points and a set of environmental layers.

(Machine Translation)
最後更新: 2020-05-29 01:35



(Machine Translation)
最後更新: 2015-03-18 19:20

CARE2X - Integrated Hospital Info System

PHP, mySQL, PostgreSQLによる統合病院情報システムです。外科、看護、外来、病棟、研究室、薬局、セキュリティ、入院患者、スケジューラ、修理、通信、その他の機能をサポートします。多言語で、WYSIWYGフォーム、ユーザ毎設定、組み込みボット、モジュラー&スケーラブルという機能、特徴があります。

最後更新: 2010-03-26 04:36

DimReduction - Dimensionality Reduction

!DimReduction プロジェクト多く機能選択アルゴリズムのパターン認識技術基準機能、グラフィック可視化ツールをサポートしているオープン ソースのマルチプラット フォーム (ジャワ) バイオインフォマティクス問題のグラフィカル環境を提供します。

(Machine Translation)
最後更新: 2007-09-26 00:09


!RasTop は蛋白質、核酸、人気 Rasmol ソフトウェアに基づいて小分子の可視化分子グラフィック プログラムです。プログラムは、急速な可視化と分子の解析を目指しています。

(Machine Translation)
最後更新: 2008-07-09 12:14


このプログラムは ABI DNA 分析装置 !GeneScan または !GeneMapper、CEQ 2000 と SCF の楽器を使用してによって生成されたデータの読み取りし、ゲルあるイメージをまっすぐにサイズを構築します。ダウンロードしてくださいと、チュートリアルを表示、2.1 のドキュメントが含まれていません。

(Machine Translation)
Development Status: 4 - Beta
目標受眾: Science/Research
操作系統: OS Independent
程式語言: Java
使用者介面: Java Swing
最後更新: 2015-04-03 10:58

MZmine 2

MZmine 2 は Java で書かれた質量分析データの差分解析フレームワークです。

(Machine Translation)
最後更新: 2018-06-15 21:51



Development Status: 4 - Beta
程式語言: C
使用者介面: Command-line
最後更新: 2015-06-12 00:10


質量分析計から得られるデータを解析/表示するためのプログラム『Mass++』の、オープンソース版開発・メンテナンス計画です。 Mass++は2006年、JST(科学技術振興機構)の戦略的創造研究推進事業(CREST)予算によって開発が開始され、2010年からは内閣府・最先端研...

Database Environment: PostgreSQL (pgsql), SQLite
Development Status: 4 - Beta
目標受眾: Science/Research
自然語言: English, Japanese
操作系統: Windows 7
程式語言: C#, C++
使用者介面: .NET/Mono, wxWidgets
Register Date: 2015-02-24 21:51